Markers |
AKA |
Chrm |
Chr
Position |
10XScaffold
# |
10xPosition |
Primers 1 |
Primers 2 |
PCR(bp) |
Ann temp (C) |
Restr Enz 1 |
Digest
Condition1 |
Type I II III |
Restr Enz 2 |
Digest
Condition2 |
Type I II III |
AK3 |
TGG994723-750 |
Ia |
1 |
TGG_994723 |
749-1528 |
TGG_994723-750F
5’-ACAACCACATTCCAAAAAGTA-3’ |
TGG_994723-750R
5’-CCCAGAGAAACCACTGTATG-3’ |
780 |
52 |
BstUI |
NEB2
60C 3% gel |
1
2
2 |
|
|
|
AK150 |
AK150B |
Ia |
2 |
TGG_994723 |
167133-167692 |
AK150B-F
5'-ACGCGCATATGCTTGTAAGA-3' |
AK150B-R
5'-ACAAGAGAGGGAACGCCAGA-3' |
560 |
55 |
BbvI |
NEB2
37C 3% gel |
1
2
2 |
|
|
|
M48 |
|
Ia |
3 |
TGG_994723 |
330799-330983 |
48-1F
5’-AACATGTCGCGTAAGATTCG-3’ |
48-2R
5’-CTCTTCACTGAGCGCCTTTC-3’ |
~
210 |
55 |
MicroS |
4% gel |
1
2
2 |
|
|
|
AK158 |
|
Ia |
4 |
TGG_994723 |
424334-424555 |
AK158-F 5'-CCTCGTCCTGTTCAATGAC-3' |
AK158-R
5'-CAGAAGGGAGAGCACAGTT-3' |
351 |
55 |
BstF5I |
NEBSE-Y 65C
3% gel |
1
2
1 |
|
|
|
AK4 |
TGG994723-480425 |
Ia |
5 |
TGG_994723 |
480533-481356 |
TGG_994723-480425F
5'-TTTCGCTCGATACTGTGAG-3' |
TGG_994723-480425R 5'-TTGCAAATACTCGAGTTGG-3' |
824 |
52 |
BstNI |
NEB2 BSA 60C 3% gel |
1
2
2 |
|
|
|
AK1 |
TGG994723-1054747 |
Ia |
6 |
TGG_994723 |
1054695-1054894 |
TGG_994723-1054747F
5'-ATTCTCTTGGTGACCTGAAGAGC-3' |
TGG_994723-1054747R
5'-AGGTAAGACGAGGTGAATCAAAA-3' |
200 |
55 |
HinfI |
NEB2
37C 3% gel |
1
2
2 |
|
|
|
AK6 |
TGG994726-338890 |
Ia |
7 |
TGG_994726 |
338707-339072 |
TGG994726-338890F
5'-ATCTCAGTCGCGGTTTTT-3' |
TGG994726-338890R-5'-ATTACTCTTTCACACGCTGTC-3' |
366 |
52 |
AluI |
NEB2
37C 3% gel |
1
2
1 |
|
|
|
AK7 |
TGG994726-337608 |
Ia |
8 |
TGG_994726 |
337435-337786 |
TGG994726-337608F
5'-TATTCTTCCTCCATGCATTC-3' |
TGG994726-337608R
5'-GAAGAGAAACTGGGAAACCT-3' |
352 |
52 |
MboI |
NEB3
37C 3% gel |
1
2
2 |
|
|
|
AK2 |
TGG994726-19617 |
Ia |
9 |
TGG_994726 |
19360-19968 |
TGG994726-19617F
5'-CATGGCTTCGAGAACACTCA-3' |
TGG994726-19617R
5'-CGTCTGCTAGAATGCCAAGA-3' |
609 |
55 |
NheI |
NEB2 BSA 37C 3% gel |
1
2
1 |
|
|
|
AK15 |
TGG995280-5 |
Ib |
1 |
TGG_995280 |
63001-63758 |
TGG995280-5'F 5'-AGGGTAGCACTGGTCTGTC-3' |
TGG995280-5'R 5'-AGTTTGGCACTGTGTCTGTT-3' |
758 |
52 |
DdeI |
NEB3
37C 3% gel |
1
2
2 |
|
|
|
MIC4 |
|
Ib |
2 |
TGG_995280 |
533027-533404 |
MIC4-F2 5'- CGGTACGGCATTACTGGATT -3' |
MIC4-R2 5'-AGCGATAAAGCCATCACCAC -3' |
378 |
55 |
Mbo
II |
NEB2
37C 3% gel |
1
2
2 |
|
|
|
ACT1 |
|
Ib |
3 |
TGG_995280 |
997399-997844 |
ACT1-F 5’-GGAAATGAAGGTCGGGAGCT-3’ |
ACT1-R 5’-CCGCCTGAAAATTGAGAGGG-3’ |
446 |
55 |
Bsm
FI |
NEB4 BSA 65C 2% gel |
1
2
2 |
|
|
|
c4-5 |
|
Ib |
4 |
TGG_995280 |
1009966-1010344 |
C4-5F 5’ – CTTGCGTGTTGCCTCATAGA-3’ |
C4-5R 5’ - CGCCGTCAGTCTTTTCAAG
–3’ |
377 |
55 |
Taq
I |
NEBU BSA 65C 2% gel |
1
2
2 |
|
|
|
AK16 |
100121265-Ib |
Ib |
5 |
TGG_995280 |
1534989-1535337 |
100121265-IbF
5'-TGCGTCTTTCTCAGAGTTG-3' |
100121265-IbR
5'-CAGGAGAAAAGGTAACTGGA-3' |
349 |
53 |
HinfI |
NEB2
37C 3% gel |
1
2
2 |
BbvI |
NEB2
37C 3% gel |
1
2
1 |
AK94 |
AK94A |
Ib |
6 |
TGG_995334 |
318006-318566 |
AK94A-F
5'-CTGCGGAGCGAGTCTTCT-3' |
AK94A-R
5'-AAGACGGTCCCTCTCTCC-3' |
561 |
55 |
HpyCH4IV |
NEB1
37C 3% gel |
1
2
1 |
|
|
|
c22-8 |
c22 |
Ib |
7 |
TGG_995334 |
103084-103604 |
C22-8F:
5'-TCTCTCTACGTGGACGCC-3' |
C22-8R:
5'-AGGTGCTTGGATATTCGC-3' |
521 |
55 |
Bsm
AI |
NEB3
55C 2% gel |
1
2
2 |
Mbo
II |
NEB2
37C 3% gel |
1
1
2 |
G11L-T7 |
|
II |
1 |
TGG_994725 |
32782-33326 |
G11L-F1 5’ – AGTGCGTGGCGCTGTAAC – 3’ |
G11L-R1 5’ – CTTTTGCATGACACTGCC – 3’ |
545 |
55 |
Bsm
AI |
NEB3
55C 3% gel |
1
1
2 |
|
|
|
AK57 |
|
II |
2 |
TGG_994740 |
608195-608585 |
AK57-F'GCGTCGTAGTCCCCTCAT-3' |
AK57-R'GCTGTCCCACACGAGAAA-3' |
275 |
55 |
BcgI |
NRBU SAM 37C 2% gel |
1
2
2 |
|
|
|
AK56 |
RC14 |
II |
3 |
TGG_994740 |
286628-287150 |
AK56F
5'-GTCCTTTTCCCCACTGCTTT-3' |
AK56R
5'-GATGGATTCCGCGAGTTTTA-3' |
523 |
55 |
MfeI |
NEB4
37C 3% gel |
1
2
1 |
|
|
|
RC3 |
6xTGG9914-5 |
II |
4 |
TGG_994740 |
3755-4418 |
TGG9914
5’-5F GAGCTGCGGATTTAAGTTGC-3' |
TGG9914
5’-5R TTTCGTCACTCATGCCTCTG -3' |
679 |
55 |
MnII |
NEB2 BSA 37C 2% gel |
1
2
1 |
|
|
|
L351 |
|
II |
5 |
TGG_995360 |
1341959-1342482 |
L351-F1 5’-TCACATACGAATTTCATCTCCG-3’ |
L351-R1 5’-GAACGGCTGAATTTGACTCTC-3’ |
524 |
55 |
Nla
III |
NEB4 BSA 37C 3% gel |
1
2
2 |
Mae
III |
2x
Buffer 55C 2% gel |
1
2
1 |
KT-L379A |
L379B |
II |
6 |
TGG_995360 |
1178102-1178591 |
L379B
995360F 5'-TTTATAGGGAGTGCCGCTGTGGA-3' |
L379B
995360R 5'-AGCCACTGAATCTCGAATACTCGTCTC-3' |
489 |
62 |
XhoI |
NEB2 BSA 37C 1% gel |
1
1
2 |
|
|
|
W35487 |
|
II |
7 |
TGG_995360 |
633273-633482 |
W35487-F
5'- GGTTCACTGGATCTTCTCCAA -3' |
W35487-R
5'- AATGAACGTCGCTTGTTTCC -3' |
243-249 |
55 |
Alu
I |
NEB2
37C 2% gel |
1
1
2 |
Bsg
I |
NEB4 SAM 37C 2% gel |
1
2
2 |
L31-T3 |
L31 |
II |
8 |
TGG_995360 |
55961-56153 |
L31-F1x 5'-TTCCTCGCTGGACACTGC-3' |
L31-R1x 5'-TCAGCAGAGCCGACGAGT-3' |
192 |
55 |
MicroS |
3% gel |
1
1
2 |
|
|
|
AK17 |
6xTGG9931-5 |
III |
1 |
TGG_995293 |
5675-6364 |
TGG9931-3F5’-GTACTGAGCCGTAGACATCG
-3’ |
TGG9931-3R
5’-CTCATGCCTTTCAAAAACAG -3’ |
690 |
55 |
BstNI |
NEB2 BSA 60C 3% gel |
1
2
1 |
|
|
|
AK95 |
AK95A |
III |
2 |
TGG_995298 |
331905-332574 |
AK95AF
5'-ACTGTCCGCTTTCTGCTG-3' |
AK95AR
5'-GTCGCACCTACTTCAACTG-3' |
670 |
55 |
BseRI |
NEB2
37C 3% gel |
1
2
2 |
|
|
|
AK119 |
AK119B |
III |
3 |
TGG_995298 |
76402-76986 |
AK119BF
5'-TGAATTCGTCTGCCAGTAA-3' |
AK119BR
5'-GCAGATCCGCATTTTAGA-3' |
585 |
55 |
AvaII |
NEB4
37C 3% gel |
1
2
1 |
|
|
|
c29-2 |
|
III |
4 |
TGG_995365 |
285620-286065 |
c29-2F
5’-AGTTCTGCAGAGTGTCGC-3’ |
c29-2R
5’-TGTCTAGGAAAGAGGCGC-3’ |
446 |
55 |
HpyCH4
IV |
NEB1
37C 2% gel |
1
1
2 |
Rsa
I |
NEB1
37C 2% gel |
1
2
1 |
AK96 |
|
III |
5 |
TGG_995365 |
723948-724600 |
AK96-F
5'-TGATGATTTCAAACGGTAAA -3' |
AK96-R
5'-
TTCAAGTCTAGATTATATTGAAACG-3'
-3' |
650 |
53 |
BstUI |
NEB2 BSA 60C 2% gel |
1
2
1 |
|
|
|
cB21-4 |
cB21 |
III |
6 |
TGG_995365 |
1143646-1144147 |
cB21-4F
5’-CCAGGTGTTTCGATATTGAT-3’ |
cB21-4R
5’-GCCTGTGTGGTGTTCGAATC-3’ |
502 |
55 |
Hae
III |
NEB2
37C 2% gel |
1
2
3 |
HpyCH4
IV |
NEB1
37C 2% gel |
1
2
1 |
AK151 |
|
III |
7 |
TGG_995365 |
1383739
-1384082 |
AK151F
5'-AGAGAAGACGGGAGTCTCA-3' |
AK151R
5'-CGTGACCTTCAGATCCACT-3' |
344 |
55 |
Hpy188III |
NEB4 BSA 37C 3% gel |
1
2
1 |
|
|
|
AK97 |
AK97C |
III |
8 |
TGG_995365 |
1653610-1654325 |
AK97CF
5'-CTCCATCCTCTTTTGTTCCT-3' |
AK97CR
5'-AAGACGGAAACACAAAATGT-3' |
716 |
55 |
BsaJI |
NEB2
60C 3% gel |
1
2
1 |
|
|
|
AK39 |
6xTGG9828-5 |
III |
9 |
TGG_994749 |
299969-299286 |
TGG9828-5F
5’-TAGCTCACGTGGGAAAATTA-3' |
TGG9828-5R
5’-AGCTCATAGAGGACCTTTGG-3 |
684 |
55 |
AlwNI |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
AK118 |
AK118A |
III |
10 |
TGG_994749 |
17308-18042 |
AK118A-F
5'CGCAACTTCTATTCGATGC-3' |
AK118A-R5'-AGATATATCGCCAACGAGAA-3' |
735 |
50 |
RsaI |
NEB1
37C 2% gel |
1
2
2 |
|
|
|
ST7A |
|
III |
11 |
TGG_995333 |
70611-71291 |
ST7A-F
5'-GGTGAGAGTCAGGACAAACT -3' |
ST7A-R
5'-TCTTCCGCTGAACAACAC -3' |
680 |
55 |
Sau3AI |
NEBU BSA 37C 2% gel |
1
2
2 |
|
|
|
cB8-9 |
|
IV |
1 |
TGG_995351 |
4874-5112 |
cB8-9F1 5’ – CGCAGAGCGTGAAGTCATAG – 3’ |
cB8-9R1 5’ – TACGACACGACGTAGCAAGG – 3’ |
428 |
55 |
Hpa
II |
NEB1
37C 2% gel |
1
1
2 |
|
|
|
c18-TA8 |
|
IV |
2 |
TGG_995351 |
10599-11109 |
C18TA8-R 5’ – GAGTCCCAGCTGTCATACCG-3’ |
C18TA8-F 5’ – CACCCAGCTTCACACCTCAG-3’ |
511 |
55 |
Mnl
I |
NEB2 BSA 37C 2% gel |
1
1
2 |
|
|
|
cA5-22 |
|
IV |
3 |
TGG_995330 |
2194-2633 |
cA5-22R 5’ – CAGCGCGGTACACAAACTC – 3’ |
cA5-22F 5’ – TGTTTTTGCTACGGATTGCTC – 3’ |
442 |
55 |
Hpa
II |
NEB1
37C 2% gel |
1
1
2 |
|
|
|
AK98 |
AK98B |
IV |
4 |
TGG_995331 |
1429581-1430134 |
AK98-F
5'-ATCCAGCCATGTAACGATAA-3' |
AK98-R
5'-TTGGAGTAAAGCTATTTCACG-3' |
552 |
55 |
TaqI |
NEBU
BSA 65C 2%
gel |
1
1
2 |
|
|
|
BSR4 |
|
IV |
5 |
TGG_995331 |
1106385-1107099 |
BSR4-F 5’-CAAGGCTAACCGTAGCGGGT-3’ |
BSR4-R 5’-CTCTTCAGGAACTTGGGGAA-3’ |
715 |
55 |
Ase
I |
NEB3
37C 2% gel |
1
1
2 |
Sau3A
I |
NEBU BSA 37C 2%
gel |
1
1
2 |
M33 |
|
IV |
6 |
TGG_995331 |
854415-854584 |
33-2R
5’-TCTTTTCTCCCCTTCGCTCT-3’ |
33-1F
5’-TACGCTTCGCATTGTACCAG-3’ |
~170 |
55 |
MicroS |
10%
PAGE in
0.5X TBE |
1
1
2 |
|
|
|
Bc18U |
Bc18 |
IV |
7 |
TGG_995331 |
640279-640845 |
BC18U-F 5’-TTGGTACACTTGCCCTGTCG-3’ |
BC18U-R 5’-GCACATGGTCTTGCTGCAGC-3’ |
566 |
55 |
Bsl
I |
NEB3
55C 2% gel |
1
1
2 |
|
|
|
Bs226 |
226 |
IV |
8 |
TGG_995331 |
639623-640228 |
226-F 5’-CAGTTCGCTCATCTACCATC-3’ |
226-Rx 5’-TTTTCACTCAAGCTCCCCTC-3’ |
607 |
55 |
Mae
III |
2x
buffer 55C 2% gel |
1
1
2 |
|
|
|
AK18 |
6xTGG9355-391 |
IV |
9 |
TGG_995331 |
377123-377395 |
TGG9355_391F
5’-AGCACAGTCCCTTGATGACC -3’ |
TGG9355_391R
5’- GAAGCAACTGGGGAGGAAAT -3’ |
273 |
55 |
Cac8I |
NEB3
37C 3% gel |
1
1
2 |
|
|
|
KT-c20R |
c20 |
IV |
10 |
TGG_995331 |
81049-81603 |
KT-C20R
F2 5’-TTCGAAAGAGAAGTAACCGGCGTGT-3’ |
KT-C20R
R2 5’-AGACGCCTGGCGGGTTGCC –3’ |
554 |
62 |
Bcc
I |
NEB1 BSA 37C 2% gel |
1
1
2 |
|
|
|
AK88 |
TGG_995281-B |
IV |
11 |
TGG_995281 |
509245-509608 |
TGG_995281-BF 5'-GTAGCGTAAACGCCTGAGT-3' |
TGG_995281-BR 5'-CTCTTCCAACTGACGAATG-3' |
340 |
53 |
FokI |
NEB4
37C 3% gel |
1
1
2 |
|
|
|
AK89 |
TGG_995281-A |
IV |
12 |
TGG_995281 |
506779-507191 |
TGG_995281-AF 5'-GCTGACGTTGCAGAGAGA-3' |
TGG_995281-AR 5'-CTCTCCGATGCACCTAAAT-3' |
360 |
53 |
MfeI |
NEB4
37C 3% gel |
1
1
2 |
|
|
|
AK99 |
|
IV |
13 |
TGG_995281 |
2608-2984 |
AK99C-
F
5'- TCGTCGTCTTCTCAGTATCC-3' |
AK99C-R
5'-TAAAGGAATCCCAGCGAAG-3' |
377 |
50 |
MspAI |
NEB4 BSA 37C 2% gel |
1
1
2 |
|
|
|
AK120 |
|
IV |
14 |
TGG_994761 |
177798-178304 |
AK120F
5'-GAGAGAAGAGCGAAGGAGAC-3' |
AK120R
5'-CTCTCCCCCAAGGACCTC-3' |
507 |
55 |
BgI
III |
NEB3
37C 3% gel |
1
1
2 |
|
|
|
AK19 |
6xTGG9448-3 |
IV |
15 |
TGG_994761 |
330781-331449 |
TGG9448-3F
5’-GAGCGCAGTGAATATGAGAC -3’ |
TGG9448-3R
5’-AAACATGACATGGCAAGAAC-3’ |
669 |
55 |
HinfI |
NEB2
37C 3% gel |
1
1
2 |
|
|
|
ST12A |
|
IV |
16 |
TGG_994707 |
83204-83777 |
ST12A-F 5'-GAACTTCCGCCTCACACA-3' |
ST12A-R
5'-
GTTTCTTGCGGGCAGTGT -3' |
572 |
55 |
AciI |
NEB3
37C 2% gel |
1
2
1 |
|
|
|
AK85 |
TGG_995369-B |
IX |
1 |
TGG_995369 |
32658-32925 |
TGG_995369-BF 5'-TCGCAGTAAGAGTGGAGATA-3' |
TGG_995369-BR 5'-TCTCCCACCAGTAAACCAC-3' |
255 |
53 |
SfcI |
NEB4 BSA 37C 3% gel |
1
2
2 |
|
|
|
AK86 |
TGG_995369-A |
IX |
2 |
TGG_995369 |
14710-15129 |
TGG_995369-AF
5'- TTAAACTCTGACACTCTTCTGC-3' |
TGG_995369-AR
5'-TCTCTTCAGAGAAATAGCAACC-3' |
410 |
53 |
BbvI |
NEB2
37C 3% gel |
1
2
2 |
|
|
|
AK87 |
TGG_994713-A |
IX |
3 |
TGG_994713 |
43615-44104 |
TGG_994713-AF 5'-AAAAGACCAAGGGGAAAGT-3' |
TGG_994713-AR 5'-CAGATGAGTCACCACTAGCA-3' |
460 |
53 |
TaqI |
NEBU BSA 65C 3% gel |
1
2
1 |
|
|
|
AK54 |
RC13 |
IX |
4 |
TGG_995367 |
1847561-1848160 |
AK54-F
5'CAGATCCTCGAAGAGTGGT -3' |
AK54-R
5'CTTCAAGGATTCTTCGTCAG-3' |
503 |
55 |
HaeIII |
NEB2
37C 2% gel |
1
2
1 |
|
|
|
BTUB |
TUB2 |
IX |
5 |
TGG_995367 |
1372413-1372823 |
Btb-F 5’-GAGGTCATCTCGGACGAACA-3’ |
Btb-R 5’-TTGTAGGAACACCCGGACGC-3’ |
411 |
55 |
BsiEI |
NEB2 BSA 60C 2% gel |
1
2
2 |
TaqI |
NEBU BSA 65C 3%
gel |
1
2
1 |
AK31 |
6xTGG9932-5 |
IX |
6 |
TGG_995367 |
1033351-1034070 |
TGG9932-5F
5’-GGTTCGTGCTTCCTCTTCAG -3’ |
TGG9932-5R
5’- GTCTTGTTCTGCCAGCCTTC-3’ |
757 |
55 |
AfI III |
NEB3 BSA 37C 3% gel |
1
2
2 |
|
|
|
AK55 |
RC12 |
IX |
7 |
TGG_995367 |
612122-612512 |
AK55-F5'-AGTAGCAAGCATCAGTGGAG-3' |
AK55-R
5'-
AATCGAAACCCTTTTCTTG-3' |
391 |
55 |
PstI |
NEB3 BSA 37C 2% gel |
1
2
1 |
|
|
|
RC1 |
6xTGG9932-3 |
IX |
8 |
TGG_995367 |
63044-63883 |
RC1F-5'TCACCATTTGCTGCTGAAAG-3' |
RC1R'-5'GGTGAGAGTCCGTGGTGTTT-3' |
796 |
55 |
Fnu4HI |
NEB4
37C 2% gel |
1
2
1 |
|
|
|
L375 |
|
IX |
9 |
TGG_994720 |
40328-40799 |
L375-F1
5’-GAAGGTTCCGATCCATGTTG-3’ |
L375-R1
5’-CGACCAAGCAACTGTCTCAA-3’ |
472 |
55 |
Mbo
I |
NEB3
37C 2% gel |
1
2
1 |
|
|
|
AK58 |
RC16 |
IX |
10 |
TGG_994720 |
521698-522122 |
AK58-F
5'AAGAGAGGGGAGAGCTGGA -3' |
AK58-R
5'
CAGCTCTGAAAACATGAAT-3' |
425 |
55 |
BstNI |
NEB2 BSA 60C 2% gel |
1
2
1 |
|
|
|
KT-L376 |
L376 |
IX |
11 |
TGG_994720 |
682530-683405 |
L376
994720F 5'-AAGCTTCTCAGTCCTTCTGCAGCTG-3' |
L376
994720R 5'-GGATCTTCTACGACACCATCTGCAAA-3' |
875 |
62 |
EcoR
V |
NEB3 BSA 37C 1% gel |
1
1
2 |
|
|
|
AK59 |
RC17 |
IX |
12 |
TGG_994720 |
1031692-1032094 |
AK59-F
5'TGAAGGAGTTGAAGAAGGAA -3' |
AK59-R
5'TGTATCTGTTCACACAGACCTC-3' |
402 |
55 |
BsaI |
NEB4
50C 2% gel |
1
2
1 |
|
|
|
KT-L62A |
62B,
L62A |
IX |
13 |
TGG_994720 |
1215768-1216254 |
KT-62B
F
5’-TTAGACGCGAGAGAGCGGAAGTCTG –3’ |
KT-62B
R
5’-GGTAGAACCCTCACTGAATGATGCCA-3’ |
485 |
62 |
BsaJ
I |
NEB2 BSA 60C 2% gel |
1
2
1 |
|
|
|
AK123 |
|
IX |
14 |
TGG_994720 |
1600686-1601027 |
AK123F 5'-GCGAAGACGTCCTCTGTAT-3' |
AK123R 5'-CGACGAGAAGAGGAAGAG-3' |
342 |
55 |
SfANI |
NEB3
37C 3% gel |
1
1
2 |
|
|
|
AK60 |
RC18 |
IX |
15 |
TGG_994720 |
1638973-1639169 |
AK60-F
5'
AATGCGTCAACGGGGAAA -3' |
AK60-R
5'GCACTTCATACAGTGGGATTTCT-3' |
200 |
55 |
MnII |
NEB2 BSA 37C 2% gel |
1
2
1 |
|
|
|
AK124 |
|
IX |
16 |
TGG_994720 |
1906146-1906530 |
AK124F 5'-GAAGATGTGATTCCAGAACG-3' |
AK124R 5'-AACTCCGGATACACAGCTC-3' |
385 |
55 |
HpyCH4
III |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
MIC1 |
|
IX |
17 |
TGG_994720 |
2139758-2140314 |
MIC1-F 5'- AGCGTTGGTCAAGCATCTGT-3' |
MIC1-R 5'- TGCGTTTTTGTGTGTTGGTT -3' |
557 |
55 |
Hha
I |
NEB4 BSA 37C 2% gel |
1
2
2 |
|
|
|
SAG5C |
|
IX |
18 |
TGG_994720 |
2398736-2399264 |
NSAG5S 5’-TGCGGCAGCAGGAAATA-3’ |
NSAG5AS 5’-TCCGTACGCGCAAATGA-3’ |
529 |
55 |
Hind
III |
NEB2
37C 2% gel |
1
1
2 |
Nci
I |
NEB4
37C 2% gel |
1
1
2 |
AK93 |
TGG_995354-D |
IX |
19 |
TGG_995354 |
156485-157024 |
TGG_995354-DF 5'-AACGTGTGTGCAGTCTGG-3' |
TGG_995354-DR 5'-CCACCCGAAATCCAAGAG-3' |
540 |
55 |
Cae8I |
NEB3
37C 3% gel |
1
2
1 |
|
|
|
AK92 |
TGG_995354-C |
IX |
20 |
TGG_995354 |
128700-129372 |
TGG_995354-CF 5'-GTTTTTGCGTTTGCAGAG-3' |
TGG_995354-CR 5'-GTCTACCACAACACCGACTT-3' |
672 |
55 |
SfcI |
NEB4 BSA 37C 3% gel |
1
2
2 |
|
|
|
B1.c |
|
IX |
21 |
TGG_995305 221-751, TGG_995301 1125-1655 |
multiple |
B1-S2 5’-TCTTCCCAGACGTGGATTTC-3’ |
B1-AS2 5’-CTCGACAATACGCTGCTTGA-3’ |
531 |
55 |
Pml
I |
NEB1 BSA 37C 2% gel |
1
2
2 |
|
|
|
AK125 |
|
IX |
22 |
TGG_995301 |
290323-290755 |
AK125F 5'-GGCTATGTGCAAAAAGAGTT-3' |
AK125R 5'-TTGCACACAAAAGGTGGT-3' |
433 |
55 |
Aci
I |
NEB3
37C 3% gel |
1
2
2 |
|
|
|
AK126 |
|
IX |
23 |
TGG_995301 |
732081-732525 |
AK126F 5'-CAGAATCCGAAACTGGTTAT-3' |
AK126R 5'-AGCACAAGTCAGACACACCT-3' |
445 |
55 |
AlwNI |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
AK127 |
AK127B |
IX |
24 |
TGG_995301 |
1001173-1001758 |
AK127BF 5'-TCGTTTTGAGTTGCGTTATT-3' |
AK127BR 5'-CGAGAAATGGTGGTGAGA-3' |
586 |
55 |
RsaI |
NEB1
37C 3% gel |
1
2
2 |
|
|
|
ST2A |
|
V |
1 |
TGG_994712 |
852-1586 |
ST2A-F
5'-GCTGGTGAAGAATAGGACAG-3' |
ST2A-R
5'-
GTTTTGTCGCCTGAGCTT -3' |
734 |
55 |
AciI |
NEB3
37C 2% gel |
1
2
1 |
|
|
|
ST2B |
|
V |
2 |
TGG_994712 |
46040-46758 |
ST2B-F
5'-ACCATTTCGGTGGATAAAC -3' |
ST2B
R
5'-ACAGAGGACGAGGCAGAG -3' |
718 |
55 |
MlnI |
NEB2 BSA 37C 2% gel |
1
2
1 |
|
|
|
KT-850 |
850 |
V |
3 |
TGG_995288 |
153714
-
154480 |
850F 5'-GAGGACCTGGTAACGGCCCTCG-3' |
850R 5'-CCGTCAAGGCTTGGATGTTTCGG-3' |
767 |
62 |
SfaNI |
NEB3
37C 3% gel |
1
2
1 |
Sau
96I |
NEB4
37C 3% gel |
1
2
3 |
AK22 |
6xTGG9917_499-684 |
V |
4 |
TGG_995288 |
267583-268182 |
TGG9917_449-684F
5’-GGCAACAAGATCCAGTTCGT -3’ |
TGG9917_449-684R
5’- CAGTTTTCTGCATCCACGAG -3’ |
600 |
55 |
HaeIII |
NEB2
37C 2% gel |
1
2
1 |
|
|
|
ST4B |
|
V |
5 |
TGG_994789 |
942-1515 |
ST4B-F
5'-CCTTGCAGGTTCAGATTTAG -3' |
ST4B-R 5'-ACTCTGCGTGGTATGTACG -3' |
573 |
55 |
MboI |
NEB3
37C 2% gel |
1
2
2 |
|
|
|
ST3B |
|
V |
6 |
TGG_994803 |
1050-1721 |
ST3B-F
5'-CCCTTGACTCTGGTATCTCA -3' |
ST3B-R
5'-GAGAGTCAGCTGCCTTGG -3' |
671 |
55 |
FokI |
NEB4
37C 2% gel |
1
2
2 |
|
|
|
AK121 |
AK121C |
V |
7 |
TGG_995283 |
27633-28192 |
AK121CF
5'-CTGGCAACCATGTTCTTTAG-3' |
AK121CR
5'-CATCAGCCGTTCAGAGAC-3' |
560 |
55 |
NlaIV |
NEB4 BSA 37C 3% gel |
1
2
1 |
|
|
|
AK100 |
|
V |
8 |
TGG_995283 |
391757-
392103 |
AK100AF-5’TCTCTTGACTCCTGATCCAC-3’ |
AK100AR-5’CATGCGTTTTCTCCTCAG-3’ |
347 |
55 |
PfIFI |
NEB4 BSA 37C 3% gel |
1
2
1 |
|
|
|
AK24 |
6xTGG9799-5 |
V |
9 |
TGG_995283 |
798492-797772 |
TGG9799-5F
5’-CTCGCTTTGGGAGTGAGTTC-3' |
TGG9799-5R
5’-TTTTTGCAGTGTGCTTCCAG-3' |
728 |
55 |
PCR |
3% gel |
1
2
2 |
|
|
|
AK101 |
AK101A |
V |
10 |
TGG_995373 |
1719693-1719994 |
AK101AF
5'-CGTCTCTGATCCACATTAGG-3' |
AK101AR
5'-CCGCAGGAAACTGAAGTG-3' |
302 |
55 |
HpaII |
NEB1
37C 3% gel |
1
2
1 |
|
|
|
KT-L354 |
L354 |
V |
11 |
TGG_995373 |
1467130-1467729 |
KT-L354
F 5’-GGAGCGGTAGTGCTGTCAGCTGTAC-3’ |
KT-L354
R 5’-CTTTGTCTTGGATGCCTCCCTGTAAA –3’ |
600 |
62 |
BsaJ
I |
NEB2 BSA 60C 2% gel |
1
2
1 |
|
|
|
AK14 |
|
V |
12 |
TGG_995373 |
1455698-1456345 |
AK14F 5'-TGTATTTCCAACACAAACGA-3' |
AK14R 5'-CGCTCGAAGAGAAAACACTA-3' |
648 |
55 |
HpaII |
NEB1
37C 3% gel |
1
2
1 |
|
|
|
L358 |
|
V |
13 |
TGG_995373 |
966472-966888 |
L358-F2 5’-AGGAGGCGTAGCGCAAGT-3’ |
L358-R2 5’-CCCTCTGGCTGCAGTGCT-3’ |
418 |
55 |
Hae
III |
NEB2
37C 2% gel |
1
2
2 |
Nla
III |
NEB4 BSA 37C 3% gel |
1
2
1 |
KT-cA5 |
cA5 |
V |
14 |
TGG_995373 |
775053
-
775902 |
CA5
995373F
5'-TGCACACGCGTCTTCACATACAGG-3' |
CA5
995373R
5'-GTCAACAATCGCGTTGGGATTTTC-3' |
849 |
62 |
BsiE1 |
NEB4
60C 3% gel |
1
2
1 |
|
|
|
cS1-13 |
cS1 |
V |
15 |
TGG_995373 |
601741-602159 |
cS1-13F 5’-CCCTGAATGTTCTTGTTTT-3’ |
cS1-13R 5’-GCCATATTGAGGCGTCAGGT-3’ |
419 |
55 |
AlwN
I |
NEB4
37C 3% gel |
1
2
1
1 2 1 |
Bsm
I |
NEB2
65C 3% gel |
|
AK25 |
6xTGG9861-5 |
V |
16 |
TGG_995373 |
405880-406517 |
TGG9861-5F
5’-GTTCTCGTCGTTGTCTCTTG -3’ |
TGG9861-5R
5’-CGTTTTCAGTGTTTTCTTGG -3’ |
638 |
55 |
FokI |
NEB4
37C 3% gel |
1
2
1 |
|
|
|
AK102 |
AK102D |
V |
17 |
TGG_995373 |
117482-117871 |
AK102DF
5'-GCGACATACGCCAGAGTC-3' |
AK102DR 5'-GTCCGTACCACACACACAT-3' |
390 |
55 |
BccII |
NEB1 BSA 37C 3% gel |
1
2
2 |
|
|
|
AK70 |
RC24 |
VI |
1 |
TGG_995364 |
88198-88530 |
AK70F-5'TTTTCTCTTGGCAGGAAATA-3' |
AK70R-5'
CGAACATCTGAGAAAAGTCC-3' |
332 |
55 |
NlaIII |
NEB2
37C 2% gel |
1
2
2 |
|
|
|
XM95 |
|
VI |
2 |
TGG_995364 |
719197-719520 |
XM95-F 5'- CGCCAAGCTAGGACAGAGAC-3' |
XM95-R
5'-
AGTCCTACATTGCCGTCACC -3' |
324 |
60 |
Nla
III |
NEB4 BSA 37C 2% gel |
1
2
2 |
|
|
|
AK72 |
RC25 |
VI |
3 |
TGG_995364 |
1037548-1038005 |
AK72F-5'AGTCCCAGTGTAGGGTCAG -3' |
AK72R-5'
TGCAACGTCTGTCTTCTTC-3' |
458 |
55 |
TaqI |
NEBU
65C 2% gel |
1
2
2 |
|
|
|
KT-950 |
950 |
VI |
4 |
TGG_995364 |
1059246-1060081 |
KT-950
F 5'-CTGATTGGAACGTCCGGCTACATG-3' |
KT-950
R 5’-CCTGGGTTGTCTTCCCGGACAAT-3’ |
836 |
62 |
Bsr
I |
NEB3 BSA 37C 2% gel |
1
2
2 |
|
|
|
AK73 |
RC26 |
VI |
5 |
TGG_995364 |
1458924-1459172 |
AK73F-5'CGTAGAGAACGACATGTTCA
-3' |
AK73R-5' ATCTATGTACAGGCGCAGTT-3' |
253 |
55 |
PstI |
NEB3
37C 2% gel |
1
2
2 |
|
|
|
AK36 |
6xTGG9798-3 |
VI |
6 |
TGG_995364 |
2018413-2019095 |
TGG9798-3F
5’-TCTTCCCAGTTGTGATGTTC -3’ |
TGG9798-3R
5’- ATCCCGATAAAACTCTGCTC -3’ |
683 |
55 |
FokI |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
PK1 |
|
VI |
7 |
TGG_995364 |
2652219-2653121 |
PK1-F 5'- CGCAAAGGGAGACAATCAGT -3' |
PK1-R 5'- TCATCGCTGAATCTCATTGC -3' |
903 |
55 |
Ava
I |
NEB4
37C 2% gel |
1
2
1 |
Rsa
I |
NEB
37C 2% gel |
1 2
2 |
L53 |
|
VI |
8 |
TGG_995364 |
2962791-2963216 |
L53-F3 5’-CTCGTTGCGTTCCTTTGACT-3’ |
L53-R3 5’-GGAGAGAAGCTCGCAGTGTC-3’ |
426 |
55 |
Hae
III |
NEB2
37C 2% gel |
1
2
1 |
HpyCH4
V |
NEB4
37C 2% gel |
1
2
2 |
AK117 |
|
VI |
9 |
TGG_995364 |
3548099-3548757 |
AK117B-F
5'-CTGCTTGAAATGCTTTCTCT-3 |
AK117B-R
5'-GATGCAGGCTCAACAGAC-3' |
657 |
50 |
BsaJI |
NEB2
60C 2% gel |
1
2
2 |
|
|
|
SAG4 |
|
VIIa |
1 |
TGG_995371 |
203841-204158 |
SAG4S1 5’-TACGATTTCAAGAAGGCGCT-3’ |
SAG4AS1 5’-GTTCTTTCCCGTGTCCTTGA-3’ |
318 |
55 |
Taq
I |
NEBU BSA 65C 2% gel |
1
1
2 |
|
|
|
Bs328 |
L328 |
VIIa |
2 |
TGG_995371 |
94791-95224 |
BS328-F2 5’-TCACTTTTTGAAGCGCTTGA-3’ |
BS328-R2 5’-CGTTCTTGTGCATGTTCTCGA-3’ |
435 |
55 |
Dde
I |
NEB3
37C 2% gel |
1
1
2 |
|
|
|
M95 |
|
VIIa |
3 |
TGG_995300 |
129424-129640 |
MS95-1F 5’-CTGCAACAAACCATGACAGC–3’ |
MS95-4R 5’-TGGACTTCTTCGTCTCTCACC-3’ |
~217-450 |
55 |
MicroS |
2% gel |
1
1
2 |
|
|
|
CS1 |
3xTGG2636 |
VIIa |
4 |
TGG_995300 |
133031-133428 |
TGG2636-F2 5'- GTGTTTGGAGGACCAGCACT -3' |
TGG2636-R2 5'- GGCACTCCTCTCTGTTCGTC -3' |
398 |
60 |
Alu
I |
NEB2
37C 2% gel |
1
1
2 |
|
|
|
CS4 |
6xTGG9834-603 |
VIIa |
5 |
TGG_995300 |
207764-208193 |
95051798-603F:
5'- CTCTTCTCTCCTCCGGACCT -3' |
95051798-603R: 5'- TGGAAAGGCTAATGGAGTGG-3' |
430 |
59 |
Nci
I |
NEB4
37C 3% gel |
1
2
1 |
Hha
I |
NEB4 BSA 37C 2% gel |
1
2
1 |
AK28 |
6xTGG9453-5 |
VIIa |
6 |
TGG_995279 |
3327409-3328081 |
TGG9453-5F
5’-CGAGTACAAACTCGTCAAGG-3’ |
TGG9453-5R
5’-GAAAAGAGAGAAGGGTGGAA-3’ |
673 |
55 |
BstUI |
NEB2
60C 3% gel |
1
2
1 |
|
|
|
CS12 |
|
VIIa |
7 |
TGG_995279 |
3325398-3325874 |
100108051F
5’- CCGCGTTACTCAAGTTTCGT -3’ |
100108051R
5’- CATGCTCTGCCTTTTTCCTC –3’ |
477 |
55 |
Hae
III |
NEB2 BSA 37C 2% gel |
1
2
2 |
|
|
|
CS2 |
6xTGG9453-309 |
VIIa |
8 |
TGG_995279 |
3018931-3019342 |
95059398-309F: 5'-TCGGATTAGTGTTGCAGGTG-3' |
95059398-309R: 5'-GAAAAGCGTGAAACGGACTC-3' |
412 |
59 |
Cvi
JI |
10x
Cvi JI
buffer + 10% DMSO 37C
3% gel |
1
1
2 |
ApaLI |
NEBU BSA 37C 2% ge |
1
2
1 |
CS11 |
|
VIIa |
9 |
TGG_995279 |
2863606-2864100 |
95053274F
5'- ATGCCGTCAGGGTCTTTACA -3' |
95053274R
5'- CCCTCTGGATCACACGAGTT -3' |
495 |
55 |
Rsa
I |
NEB1
37C 2% gel |
1
2
2 |
|
|
|
CS5 |
6xTGG9803-628 |
VIIa |
10 |
TGG_995279 |
2831433-2832061 |
95060335-628F: 5'-ACCGTAGTTCACCCGATCAA-3' |
95060335-628R: 5'-CGCCATAGACAAGAGGAAGG-3' |
629 |
55 |
Hae
III |
NEB2
37C 2% gel |
1
2
1 |
|
|
|
CS10 |
|
VIIa |
11 |
TGG_995279 |
2823064-2823553 |
95052105F
5'- GGGAGAGGGACACAGATTCA -3' |
95052105R
5'- CTGCGCAAACACTGTAGGAA -3' |
490 |
55 |
SacII |
NEB4 BSA 37C 2% gel |
1
1
2 |
|
|
|
CS3 |
6xTGG9803-695 |
VIIa |
12 |
TGG_995279 |
2666751-2667307 |
95056843-695F: 5'-AGCGGATTTCCAACACTGTC -3' |
95056843-695R: 5'-CTGCTGCATTCACAAACTCC-3' |
557 |
55 |
Nla
III |
NEB4 BSA 37C 2% gel |
1
2
1 |
Mbo
I |
NEB3
37C 2% gel |
1
1
2 |
CS6 |
|
VIIa |
13 |
TGG_995279 |
2527035-2527588 |
VIIROP-F
5'- TGAATTAGGCCTGGTCGTTC -3' |
VIIROP-R
5'- CGTTCCCCTCTTCATTTTGA -3' |
554 |
55 |
Hha
I |
NEB4 BSA 37C 2% gel |
1
2
2 |
|
|
|
MIC11 |
|
VIIa |
14 |
TGG_995279 |
2310767-2312021 |
MIC11-F
5'-TGCAGCTCAAGAAGCTTTCA-3' |
MIC11-R
5'-ATTGTTTCCGCTTCAACCAG-3' |
1255 |
63 |
TaqI |
NEBU BSA 65C 2% gel |
1
1
2 |
|
|
|
CS7 |
|
VIIa |
15 |
TGG_995279 |
2287108-2287552 |
VIIHSP-F
5'- CGTCTCTGGAGTCCTTCGTC -3' |
VIIHSP-R
5'- CCGAGGCTCATTTCTCTTTG -3' |
445 |
55 |
Hae
II |
NEB4 BSA 37C 2% gel |
1
2
2 |
|
|
|
AK43 |
RC5 |
VIIa |
16 |
TGG_995279 |
2243569-2244368 |
AK43F
5'
CATGCCCTTTTAAACGTAAG -3' |
AK43R-5'CTGCACATCTGTATCCATTG-3' |
786 |
53 |
EcoR1 |
NEB1
37C 2% gel |
1
2
1 |
|
|
|
CS8 |
|
VIIa |
17 |
TGG_995279 |
2241513-2241918 |
VIIOWP-F 5'- GTTCCCCAACGCTAGTTTGA -3' |
VIIOWP-R 5'- GCGGAAACAAAATGAGCAAT -3' |
406 |
55 |
Hpa
I |
NEB4 BSA 37C 2% gel |
1
1
2 |
|
|
|
CS9 |
|
VIIa |
18 |
TGG_995279 |
2197552-2197964 |
VIISUL-F 5'- GCCTTGTACACCGACACAAA
-3' |
VIISUL-R
5'- GTGAATGAGAAGGCGAGGTC -3' |
413 |
55 |
BssSI |
NEB3 BSA 37C 2% gel |
1
2
1 |
|
|
|
TgSUB1 |
|
VIIa |
19 |
TGG_995279 |
2006447-2006864 |
Sub3-F
5'-GATGCCCTCACTCTCCTCTC-3' |
Sub3-R
5'-CGTTCGTGGAGACGATAAGC-3' |
418 |
55 |
HpyCH4
IV |
NEB1
37C 2% gel |
1
2
1 |
|
|
|
cS10-A6 |
cS10A |
VIIa |
20 |
TGG_995279 |
2002567-2002907 |
CS10-A6F 5'-CTGGTTACATTTTCGCCTATCA-3' |
CS10-A6R 5'-CCTAGTCCAAACTAGGGCTTGA-3' |
341 |
55 |
Rsa
I |
NEB1
37C 2% gel |
1
1
2 |
HpyCH4
IV |
NEB1
37C 3% gel |
1
2
1 |
AK109 |
AK109A |
VIIa |
21 |
TGG_995279 |
1488623-1489479 |
AK109AF 5'-CGTTTCGATTTTTCAAGAGA-3' |
AK109AR 5'- GTTTGTATGTATGCATGGATGT-3' |
857 |
55 |
BfrBI |
NEB4 BSA 37C 3% gel |
1
2
1 |
|
|
|
M102 |
|
VIIa |
22 |
TGG_995279 |
914651-914815 |
102-1F
5’-CAGTCCAGGCATACCTCACC-3’ |
102-2R
5’-CAATCCCAAAATCCCAAACC-3’ |
~166 |
55 |
MicroS |
3% gel |
1
2
3 |
|
|
|
AK44 |
RC6 |
VIIa |
23 |
TGG_995279 |
768274-768932 |
AK44-F
5'-
GTTTGGTTTCGATTCACTGT-3' |
AK44-R
5'-
CGATTCGAAGACAAGACATT-3' |
659 |
53 |
Nae
I |
NRB1
37C 2% gel |
1
2
1 |
|
|
|
MIC2 |
|
VIIa |
24 |
TGG_995279 |
248888-249605 |
MIC2-F1
5’-
TGTGCCGAAGCTAGTGATTG –3’ |
MIC2-R1
5’-
GACAGTGCAGTCGCTCCAT –3’ |
718 |
55 |
Xmn
I |
NEB2 BSA 37C 2% gel |
1
2
1 |
|
|
|
AK110 |
|
VIIa |
25 |
TGG_995372 |
86114-86396 |
AK110BF
5’-
TAGACATTTCTGCCGGTCT-3’ |
AK110B
R
5’- AGAAGAAGAGGACGAAGAGG-3’ |
283 |
55 |
BccI |
NEB3 BSA 37C 2% gel |
1
2
2 |
|
|
|
AK82 |
TGG_995372-A |
VIIa |
26 |
TGG_995372 |
375219-375622 |
TGG_995372-AF 5'-AAAAAGATGTGCAACAGAGC-3' |
TGG_995372-AR 5'-CACTTTGGGATATGTTCGTT-3' |
404 |
50 |
NlaIII |
NEB4 BSA 37C 3% gel |
1
2
1 |
|
|
|
AK29 |
6xTGG9870-5(2) |
VIIa |
27 |
TGG_995372 |
469648-470408 |
TGG9870-5(2)F 5'-GCGATCAGACATTTAACGAG-3' |
TGG9870-5(2)R 5'-GGTCTAATGTGTACGCAAGC-3' |
761 |
55 |
SpeI |
NEB2 BSA 37C 3% gel |
1
2
1 |
|
|
|
KT-c16AR |
c16A |
VIIa |
28 |
TGG_995372 |
476283-476967 |
KT-C16R
F2 5’-GGCTGCTCGAATTGGATTATCTGTGC –3’ |
KT-C16R
R2
5’-GCCACATGGCCACGCCTCT –3’ |
685 |
62 |
Sac
II |
NEB4 BSA 37C 2% gel |
1
2
1 |
|
|
|
KT-c20B |
c20B |
VIIa |
29 |
TGG_995372 |
481136-481800 |
KT-C20B
F 5’-TGTGGTATTTGTTGCTCCGGACAA-3’ |
KT-C20B
R 5’-AGCGGCGTCTGATCCTGCAG-3’ |
665 |
62 |
BseR
I |
NEB2 BSA 37C 2% gel |
1
2
2 |
|
|
|
AK103 |
AK103A |
VIIb |
1 |
TGG_995366 |
4996718-4997122 |
AK103AF
5'-CATTAAACGTGTCTTTCACTG-3' |
AK103AR
5'-CCTGTGGTATCATCTGTCC-3' |
405 |
55 |
ApaLI |
NEB4 BSA 37C 3% gel |
1
2
1 |
|
|
|
L339 |
|
VIIb |
2 |
TGG_995366 |
4466260-4466902 |
L339-F 5’-AAGCTTTGCGAGCAAAACCA-3’ |
L339-R 5’-ATTCGCGTCCAAGTGAATTG-3’ |
644 |
55 |
Hpa
II |
NEB1
37C 2% gel |
1
1
2 |
|
|
|
L363 |
|
VIIb |
3 |
TGG_995366 |
4158329-4158833 |
L363-F1 5’-GGCTATTCGGCAAACAACAC-3’ |
L363-R1
5'-GCAATCCAGTGAGTCACCAA-3' |
504 |
55 |
Hpa
II |
NEB1
37C 3% gel |
1
2
2 |
HpyCH4
IV |
NEB1
37C 3% gel |
1
1
2 |
AK104 |
|
VIIb |
4 |
TGG_995366 |
3603126-3603586 |
AK104F 5'-TTTTTGTTTGATGTATTTGTAGA-3' |
AK104R 5'-GGTACGGCCACAACAGAC-3' |
461 |
55 |
Tsp45I |
NEB1
65C 3% gel |
1
2
2 |
BstXI |
NEB3
55C 3%gel |
1
2
1 |
AK105 |
|
VIIb |
5 |
TGG_995366 |
2892714-2893416 |
AK105F 5'-GTCGCTCTGTTGCGTGAA-3' |
AK105R 5'-CATCTATACCGTGCAGCTCT-3' |
703 |
55 |
FokI |
NEB4
37C 3% gel |
1
2
2 |
HhaI |
NEB4 BSA 37C 3%gel |
1
2
1 |
cA5-2 |
|
VIIb |
6 |
TGG_995366 |
2497338-2497768 |
cA5-2F 5’-CGAGTTGCAGCAAATCGATA-3’ |
cA5-2R 5’-TCGCTTTAAACTCGGGTGAG-3’ |
431 |
55 |
Hga
I |
NEB1
37C 2% gel |
1
1
2 |
|
|
|
AK106 |
AK106A |
VIIb |
7 |
TGG_995366 |
2022315-2022654 |
AK106AF
5'-GCTCTCTTTGAGTGCGACAT-3' |
AK106AR
5'-AGAGGAAAAGATTTTGCTGAA-3' |
340 |
55 |
AluI |
NEB2
37C 3% gel |
1
2
2 |
|
|
|
AK107 |
AK107B |
VIIb |
8 |
TGG_995366 |
1613966-1614295 |
AK107BF
5'-GAAGATGAAGTGGCGTGT-3' |
AK107BR
5'-GGCAACACGGAAATAACATA-3' |
330 |
55 |
HhaI |
NEB4 BSA 37C 3% gel |
1
2
2 |
|
|
|
AK108 |
AK108A |
VIIb |
9 |
TGG_995366 |
973732-974085 |
108AF
5'-CTCTAGCGACGCAGAAGC-3' |
108AR
5'-GCACAGGAAAGAAAAATGTC-3' |
354 |
55 |
PshaI |
NEB4 BSA 37C 3% gel |
1
2
2 |
|
|
|
AK26 |
6xTGG9444-3 |
VIIb |
10 |
TGG_995366 |
563365-564010 |
TGG9444-3F
5’-GGGAGCATGTTCTTCTCTCT-3' |
TGG9444-3R
5’-TGTCAGTCAATCAAACGTGA-3' |
659 |
55 |
AfI
III |
NEB3 BSA 37C 3% gel |
1
2
2 |
|
|
|
AK27 |
6xTGG9444-5 |
VIIb |
11 |
TGG_995366 |
260328-260976 |
TGG9444-5F
5’-CTACGATGTGAAGAGGAACG -3’ |
TGG9444-5R
5’-CATGTATCCCGCAGTACAAT -3’ |
649 |
55 |
ApaLI |
NEB4 BSA 37C 2% gel |
1
2
2 |
|
|
|
AK46 |
RC7 |
VIII |
1 |
TGG_995362 |
110295-110678 |
AK46F-
5'CTGTCGAGACTGGATTTCTT -3' |
AK46R
5' GGAGTACTTCAGCGTGTTCT-3' |
384 |
53 |
PvuII |
NEB2
37C 2% gel |
1
2
2 |
|
|
|
AK47 |
RC8 |
VIII |
2 |
TGG_995362 |
467431-467733 |
AK47F5'-
GGACCAACACCGTCAATA -3' |
AK47F5'- CACCCTCGAGTCTGTTCA-3' |
300 |
53 |
BsaHI |
NEB2
60C 2% gel |
1
2
2 |
MwoI |
NEBU 60C 3% gel |
|
AK111 |
|
VIII |
3 |
TGG_995362 |
1004036-1004495 |
AK111BF-5’-
CGGTAGCATTCGGTAGTAGT-3’ |
AK111BR-5’-
TTGTATCAACGGTATTGCAC-3’ |
460 |
55 |
PvuI |
NEB4 BSA 37C 2% gel |
1
2
2 |
|
|
|
AK112 |
|
VIII |
4 |
TGG_995362 |
1513413-1513864 |
AK112F-5’-AAGAAATCTCACCTGGACAA-3' |
AK112R-5’-GTTTTATTGTGGATCCAAGG-3' |
452 |
55 |
StyI |
NEB3 BSA 37C 2% gel |
1
2
2 |
|
|
|
AK162 |
|
VIII |
5 |
TGG_995362 |
1658055
-1658403 |
AK162F 5'-CTAGACACCTTCTCCGTCTC-3' |
AK162R 5'-CTCATCTCGGGGATTTTC-3' |
349 |
55 |
Mwo
I |
NEB3
60C 3% gel |
1
1
2 |
|
|
|
AK152 |
AK152B |
VIII |
6 |
TGG_995362 |
1773889-1774238 |
AK152BF
5'-CTGTCTGTCACTTGAAAACG-3' |
AK152BR
5'-GCTGTGAGCAGTAAGAGCTG-3' |
350 |
55 |
HphI |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
AK49 |
RC9 |
VIII |
7 |
TGG_995362 |
2026084-2026428 |
AK49F-5'
CGTCACGTCATCGTTATTC |
AK49R-5'
ATCATGGCCACCTTCTTT-3' |
350 |
55 |
HinfI |
NEB2
37C 2% gel |
1
2
2 |
|
|
|
SRS1 |
|
VIII |
8 |
TGG_995362 |
2658988-2660373 |
SRS1-S1 5’- TTGTGCCTGAGTTCGTCTTG-3’ |
SRS1-AS1 5’- TGTCCACTCACGTACCGAAA-3’ |
1386 |
55 |
ApaL
I |
NEB4 BSA 37C 2% gel |
1
2
2 |
Hae
II |
NEB4 BSA 37C 2% gel |
1
1
2 |
SAG1.c |
|
VIII |
9 |
TGG_995362 |
2662455-2662801 |
SAG1-S2 5’- CAATGTGCACCTGTAGGAAGC -3’ |
SAG1-AS2 5’- TTATCTGGGCAGGTGACAAC -3’ |
347 |
55 |
Hae
II |
NEB4 BSA 37C 2% gel |
1
2
2 |
Sau96
I |
NEB4
37C 2% gel |
1
2
2 |
SRS2 |
|
VIII |
10 |
TGG_995362 |
2669450-2670581 |
SRS2S
5’-CGAGAATGGCGACGCGTGCGTCTT-3’ |
SRS2AS 5’-TTCCCCACTCAATAGGCAAGT-3’ |
1132 |
55 |
Sfa
NI |
NEB3
37C 2% gel |
1
2
2 |
|
|
|
AK113 |
|
VIII |
11 |
TGG_995368 |
3811217-
3811796 |
AK113AF-5’TTCTTTCTGTTGCTCACCTC-3 |
AK113AR-5’GTTCGTTTTCTTCTCCACAC-3’ |
580 |
55 |
NlaIII |
NEB4 BSA 37C 3% gel |
1
2
2 |
|
|
|
AK50 |
RC10 |
VIII |
12 |
TGG_995368 |
3586009-3586358 |
AK50-F
5'-GCTGCACATCTTTTCTTTTT -3' |
AK50-F5'-
GACACAAGGGAAGGGAAG-3' |
350 |
55 |
BssHII |
NEB3
37C 2% gel |
1
2
2 |
|
|
|
AK51 |
|
VIII |
13 |
TGG_995368 |
3050117-3050467 |
AK51F 5'-GGTGTGCCATATTTCTTTCT-3' |
AK51R 5'-CGGTCTCAGGAACTGTTTT-3' |
351 |
55 |
DdeI |
NEB3
37C 3% gel |
1
2
2 |
|
|
|
AK52 |
RC11 |
VIII |
14 |
TGG_995368 |
2494691-2495449 |
AK52-F
5'-
TTCTGTGAGTGTGCTCTTTG-3' |
AK52-R5'-
GGCACTTCGAGAAGAAAAG-3' |
759 |
55 |
FokI |
NEB3
37C 2% gel |
1
2
1 |
|
|
|
AK30 |
6xTGG9416-5 |
VIII |
15 |
TGG_995368 |
2298591-2299099 |
TGG9416-5F
5’-CGGGACCTTGTTTGTGACTT-3’ |
TGG9416-5R
5’- TACTAGCGGGCAGAGTCGAT -3’ |
653 |
55 |
BsII |
NEB3
55C 3% gel |
1
1
2 |
|
|
|
SAG2 |
|
VIII |
16 |
TGG_995368 |
1998357-1998902 |
SAG2-Fa 5’-ACCCATCTGCGAAGAAAACG-3’ |
SAG2-Ra
5’-ATTTCGACCAGCGGGAGCAC-3’ |
546 |
55 |
Hinf
I |
NEB2
37C 2% gel |
1
1
2 |
Taq
I |
NEBU BSA 65C 2% gel |
1
2
1 |
GRA1 |
|
VIII |
17 |
TGG_995368 |
1445917-1446743 |
GRA1-5 5’-CGGTTTGCTTGTGTTGTTTG-3’ |
GRA1-3 5’- CATGGGGTACGATCACAACA-3’ |
827 |
55 |
Hind
III |
NEB2
37C 2% gel |
1
2
2 |
Nla
IV |
NEB4 BSA 37 C 2% gel |
1
2
1 |
MAG1 |
|
VIII |
18 |
TGG_995368 |
1444728-1445191 |
MAG1-F1 5’-TCTGTGTGCTAGACGTACTCTAACG-3’ |
MAG1-R1 5’-TTTCTGTTGCCTCCCCTGTT-3’ |
463 |
55 |
BsmFI |
NEB4 BSA 65C 2% gel |
1
2
1 |
|
|
|
KT-c13R |
c13 |
VIII |
19 |
TGG_995368 |
801141
-
801814 |
995368
C13F
5'-GATCACACGTCAACGACAAATTACGC-3' |
995368
C13R
5'-CCCGAAGACACACTTCTCAGGTGAG-3' |
673 |
62 |
Fnu4H1 |
NEB4
37C 1%gel |
1
2
2 |
|
|
|
KT-c24A |
c24A |
VIII |
20 |
TGG_995368 |
586515-587174 |
KT-C24A
F2 5’-ACCGTCGAAGCTGAAAGGTTGTGG-3’ |
KT-C24A
R2 5’-TTAATCGAAGACGTGGCGAAAAGG-3’ |
660 |
62 |
Mly
I |
NEB4 BSA 37C 2% gel |
1
2
1 |
|
|
|
AK53 |
RC15 |
VIII |
21 |
TGG_995368 |
465077-465800 |
AK53-F
5'TTCGTCGCATACCCACAGTA -3' |
AK53-R
5'
TCATCCCTAGAGCCTCCTCA-3' |
724 |
55 |
DdeI |
NEB3
37C 2% gel |
1
2
1 |
|
|
|
AK114 |
|
VIII |
22 |
TGG_995345 |
11699-12148 |
AK114C-F
5'CTCTCTCCCGCTTTTTGA-3' |
AK114C-R-5'-ACTCTCAAGAGTCTACAGTTCCA-3' |
450 |
50 |
BccI |
NEB4 BSA 37C 2% gel |
1
2
1 |
|
|
|
RC2 |
TGG9840-328 |
VIII |
23 |
TGG_995345 |
70883-71483 |
TGG9840_140-328F-GCTGCATTCATGAAAACACAA-3' |
TGG9840_140-328R-
AGAAACCTGAATGGATTCACAGA-3' |
600 |
55 |
HpyCH4V |
NEB1
37C 2% gel |
1
2
1 |
|
|
|
ST10A |
|
X |
1 |
TGG_995346 |
27673-28381 |
ST10A-
F
5'-TTTGTGCTTAGTTCTTGAGATG -3' |
ST10A-
R
5'-GGAGCAGTTCATCTGGAAAT -3' |
708 |
55 |
RsaI |
NEB1
37C 2% gel |
1
2
1 |
|
|
|
AK62 |
RC20 |
X |
2 |
TGG_995361 |
3764642-3764919 |
AK62F
5'ACGCTCTTTGAGGGTCAT-3' |
AK62R
5'-ACTAAACGGACGCAGTTCT-3' |
278 |
55 |
Mse
I |
NEB2
37C 2% gel |
1
2
1 |
|
|
|
AK128 |
|
X |
3 |
TGG_995361 |
3622746-3623105 |
AK128F 5'-AAAAGAGAGGAACGCGAGA-3' |
AK128R 5'-CCTCTTTGTGTGGCGTATT-3' |
360 |
55 |
Hpy99I |
NEB4
37C 3% gel |
1
2
1 |
|
|
|
IMC2 |
|
X |
4 |
TGG_995361 |
3400245-3401067 |
IMC2-F
5'-
TGAGAACCTGGGAGGTAGGA -3' |
IMC2-R
5'-
GCAGGAAGCAAACGTAGACC -3' |
823 |
55 |
Sfa
N I |
NEB3
37C 2% gel |
1
2
2 |
|
|
|
AK129 |
|
X |
5 |
TGG_995361 |
3183002-3183355 |
AK129F 5'-GCGAGGGTCTGAGTAAGTC-3' |
AK129R 5'-GCTCTAATCCGTAGACGAAC-3' |
354 |
55 |
DdeI |
NEB2
37C 3% gel |
1
2
1 |
|
|
|
GRA2 |
|
X |
6 |
TGG_995361 |
3051578-3052277 |
GRA2-F 5'-GCAACAAGAGCCAGAAGAAC-3' |
GRA2-R 5'-ACCAAAAACTTGCATCCCAG-3' |
700 |
55 |
Mnl
I |
NEB2 BSA 37C 3% gel |
1
2
1 |
|
|
|
GRA3 |
|
X |
7 |
TGG_995361 |
2875364-2876184 |
GRA3-S2 5’- TACGCGTCGAGTAACCAGTG –3’ |
GRA3-AS3 5’ – AGAGACTGGCACGATGCTTT – 3’ |
821 |
55 |
Nci
I |
NEB4
37C 2% gel |
1
2
1 |
|
|
|
AK63 |
RC21 |
X |
8 |
TGG_995361 |
2267133-2267580 |
AK63F-5'CTGTATACCATCGAGCACTG
-3' |
AK63R5'-CTCCTTCTTCGGCTTCTC-3' |
448 |
55 |
BsmI |
NEB2
65C 2%gel |
1
2
1 |
|
|
|
AK64 |
|
X |
9 |
TGG_995361 |
1817067-1817596 |
AK64F 5'-AGAAATCGGCGTATGCTC-3' |
AK64R 5'-ATGCGGAGAAGTCTCGTAG-3' |
530 |
55 |
BsmAI |
NEB3
55C 3% gel |
1
2
2 |
|
|
|
AK65 |
|
X |
10 |
TGG_995361 |
1438652-1439202 |
AK65-F
5'GCCTCCGGTAGTATTTCTTT-3' |
AK65-R
5'TCAACGTTCCAGTTATGTCA-3' |
551 |
55 |
BfaI |
NEB4
37C 2% gel |
1
2
1 |
|
|
|
SRS4 |
|
X |
11 |
TGG_995361 |
1087731-1088664 |
SRS4-S1 5’-GTTCCCGAAAGCATGAAGAA-3’ |
UK3-FUS3
5’- GCggatccCGTCTGGACAGCTGAAAATT-3’ |
934 |
55 |
Nci
I |
NEB4
37C 2% gel |
1
1
2 |
Acc
I |
NEB4
37C 2% gel |
1
1
2 |
AK33 |
6xTGG9403-5 |
X |
12 |
TGG_995361 |
931965-932588 |
TGG9403-5F
5’-CTCCTGAGGTGCTTCTCCAC -3’ |
TGG9403-5R
5’- TGGGGATTCTTCAGTTCACC-3’ |
624 |
55 |
HpycH4IV |
NEB1
37C 3% gel |
1
2
2 |
|
|
|
AK66 |
|
X |
13 |
TGG_995361 |
488396-488772 |
AK66F 5'-TTGAACTGAGTGCGTAACTG-3' |
AK66R 5'-GAGCCACTTCACCCCTAC-3' |
377 |
55 |
BstUI |
NEB2
60C 3% gel |
1
2
1 |
|
|
|
AK130 |
|
X |
14 |
TGG_995361 |
70518-70982 |
AK130F 5'-CTCGTTTATCGGGGGTAG-3' |
AK130R 5'-GACTCGAAGCAGGACGAC-3' |
465 |
55 |
DdeI |
NEB2
37C 3% gel |
1
2
2 |
|
|
|
AK131 |
AK131A |
X |
15 |
TGG_995355 |
240108-240467 |
AK131AF
5'-CATATACGGTGCTACCTGCT-3' |
AK131AR
5'-ATGCTGACAGAAGTGACTGA-3' |
360 |
55 |
Bsl
I |
NEB2
55C 3% gel |
1
2
1 |
|
|
|
c19-TA3 |
c19 |
X |
16 |
TGG_995355 |
59567-60007 |
c19TA3-F 5’ – CGGTCTCGTTGAAGTGTTTG – 3’ |
c19TA3-R 5’ – GCCACAGTACAGCGAGTTGA – 3’ |
441 |
55 |
Hinf
I |
NEB2
37C 2% gel |
1
2
2 |
Bfa
I |
NEB4
37C 2% gel |
1
2
1 |
AK34 |
6xTGG9919-3 |
X |
17 |
TGG_995363 |
1749-2426 |
TGG9919-3F
5’-TCCTTGCCATTCAAGAATCC-3' |
TGG9919-3R
5’-GCAACTTGAGGAGAGGCAAC-3' |
678 |
55 |
RsaI |
NEB1
37C 2% gel |
1
2
1 |
|
|
|
AK153 |
AK153C |
X |
18 |
TGG_995363 |
280870-281169 |
AK153CF
5'-GCGTTCAACCAGGATCTC-3' |
AK153CR
5'-CACAAGACGCGAATCAAG-3' |
300 |
55 |
Aci
I |
NEB3
37C 3% gel |
1
2
1 |
|
|
|
AK32 |
6xTGG9919-5 |
X |
19 |
TGG_995363 |
598940-599687 |
TGG9919-5F
5’-GAGTGCTCCTTCTGGACCTG -3’ |
TGG9919-5R
5’- TATGCACGGTCAATCGTTGT-3’ |
748 |
55 |
XhoI |
NEB2 BSA 37C 3% gel |
1
2
1 |
|
|
|
AK132 |
AK132B |
X |
20 |
TGG_995363 |
1812735-1813183 |
AK132BF
5'-GTGTCTGGATCTTCCACTATG-3' |
AK132BR
5'-TCTTCTCTCACGAGGAACC-3' |
449 |
55 |
Mbo
I |
NEB3
37C 3% gel |
1
1
2 |
|
|
|
AK67 |
|
X |
21 |
TGG_995284 |
1704-2056 |
AK67-F'
GTGGAGCATTACAATCAGGT-3' |
AK67-R'AGTAACTAGTTTGAGGGAATGC-3' |
353 |
55 |
BsrI |
NEB3
65C 2% gel |
1
2
2 |
|
|
|
L366 |
|
X |
22 |
TGG_995284 |
495515-496057 |
L366-F2 5’-CAATAAAAGTGCCAAGAGGGA-3’ |
L366-R2 5’-TTCAGCAGGCAGTGGAACAA-3’ |
544 |
55 |
HpyCH4
IV |
NEB1
37C 2% gel |
1
1
2 |
Aci
I |
NEB3
37C 3% gel |
1
2
2 |
M2AP |
|
X |
23 |
TGG_995284 |
591678-592186 |
M2AP-F 5'- CACGGTTGTCCAAGTGTGAG -3' |
M2AP-R 5'- ACACAACAAGCACGGAACAA -3' |
510 |
55 |
Bfa
I |
NEB4
37C 3% gel |
1
2
1 |
|
|
|
AK154 |
|
X |
24 |
TGG_995284 |
814011-814381 |
AK154F 5'-GTTTGTGATGCGTATGTGTG-3' |
AK154R 5'-ATAACTCCCGAAGGCGTA-3' |
371 |
55 |
MseI |
NEB2 BSA 37C 3% gel |
1
2
1 |
|
|
|
AK157 |
|
X |
25 |
TGG_995284 |
977100-977649 |
AK157F 5'-AACCTCCACGTGTCTTTTC-3' |
AK157R 5'-GTAGCGCTGTTCAATCTCA-3' |
550 |
55 |
HphI |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
AK69 |
RC23 |
X |
26 |
TGG_995284 |
1141166-1141655 |
AK69F-5'ACGAGCAACCATATCTTACC-3' |
AK69R-5'CGAACGGACAACAAGCTA |
490 |
55 |
HinfI |
NEB2
37C 3% gel |
1
2
3 |
|
|
|
AK148 |
AK148B |
X |
27 |
TGG_995297 |
625-1195 |
AK148BF
5'-GTGTTTTTGACCGGCTTT-3' |
AK148BR
5'-CAAGCTAATTACGTTTCTGTACC-3' |
571 |
55 |
Hpy188III |
NEB4 BSA 37C 3% gel |
1
2
1 |
|
|
|
GRA6 |
|
X |
28 |
TGG_995297 |
114937-115287 |
GRA6-F1x 5'- ATTTGTGTTTCCGAGCAGGT -3' |
GRA6-R1x 5’- TCGCCGAAGAGTTGACATAG -3' |
351 |
55 |
Mse
I |
NEB2 BSA 37C 3% gel |
1
2
3 |
|
|
|
RC4 |
6xTGG9393
257_262 |
X |
29 |
TGG_995352 |
90448-91237 |
95058929_257_262F5'.-CGGACCTCAGAAAGCACATA
-3' |
95058929_257_262Rev.-GAGCAGTTGTCTTCGTCGTG
-3' |
601 |
55 |
Taq1 |
NEBU BSA 65C 2% gel |
1
2
1 |
|
|
|
AK142 |
AK142A |
XI |
1 |
TGG_995302 |
209266-209955 |
AK142AF
5'-AGGCGAAGTCACTCAGTTT-3' |
AK142AR
5'-GACGCTCGGATATCTGCT-3' |
690 |
60 |
BstU
I |
NEB2
60C 3% gel |
1
2
2 |
|
|
|
AK83 |
TGG_995302-B |
XI |
2 |
TGG_995302 |
68301-68700 |
TGG_995302-BF 5'-CTCAGGTGTGCTCTGGAA-3' |
TGG_995302-BR 5'-ATAAATGGCTAACGCGATCT-3' |
390 |
53 |
BsmI |
NEB2
65C 3% gel |
1
2
2 |
|
|
|
AK134 |
|
XI |
3 |
TGG_995313 |
165435-165815 |
AK134F 5'-ATCCTGTTTACGGCGAAT-3' |
AK134R 5'-GATGCAATCAAGAGCACAAT-3' |
381 |
55 |
Hpy188III |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
AK143 |
|
XI |
4 |
TGG_995313 |
269807-270263 |
AK143F 5'-AAATCCGACAGGCGTTCT-3' |
AK143R 5'-CAGTCGATTGATTGGGTTC-3' |
457 |
60 |
AcuI |
NEB2 SAM 37C 3% gel |
1
2
2 |
|
|
|
AK133 |
AK133B |
XI |
5 |
TGG_995313 |
315979-316348 |
AK133BF
5'-TAGACTGTGTTGAGCTGCTG-3' |
AK133BR
5'-TAGCGGGGTAGAGTATGAGA-3' |
370 |
55 |
HaeIII |
NEB2
37C 3% gel |
1
2
2 |
|
|
|
ROP1 |
|
XI |
6 |
TGG_995313 |
502540-502987 |
ROP1.F 5’-CGTGACATATACTGCACTGAC-3’ |
ROP1.R2 5’-CATCGTGAAACGTGTCATC-3’ |
451 |
55 |
Hae
III |
NEB2
37C 2% gel |
1
2
2 |
|
|
|
AK135 |
|
XI |
7 |
TGG_995313 |
549309-549903 |
AK135F 5'-TCACAAGAATGGGACGTG-3' |
AK135R 5'-TGTTTATTTTATCGACAAGAGC-3' |
595 |
55 |
BstF5I |
NEB4
65C 3% gel |
1
2
2 |
|
|
|
AK10 |
|
XI |
8 |
TGG_995313 |
1086673-1087172 |
AK10F 5'-AAAACGCGTTAGGGTTTAG-3' |
AK10R 5'-ACGTGGCTGAGAGAAAAAG-3' |
500 |
53 |
SfcI |
NEB4 BSA 37C 3% gel |
1
2
2 |
|
|
|
GRA4 |
|
XI |
9 |
TGG_995313 |
1345008-1345627 |
GRA4-F 5'-CCATCCTCTGTTCAACCGGG-3' |
GRA4-R 5'-AGTGGCAAACGAGCACGACT-3' |
620 |
55 |
Hga I |
NEB1
37C 2% gel |
1
2
2 |
|
|
|
AK141 |
|
XI |
10 |
TGG_995313 |
1451742-1452112 |
AK141F 5'-GTATTTTTGATGCCGAGAAC-3' |
AK141R 5'-CCGGGTAAAGATAGATGTGA-3' |
371 |
55 |
SpeI |
NEB2 BSA 37C 3% gel |
1
2
2 |
|
|
|
AK155B |
AK155B |
XI |
11 |
TGG_995313 |
1609506-1610180 |
AK155BF
5'-CTGTTCAACAACGACCACT-3' |
AK155BR
5'-ACGTAACTCCCAGCTTCC-3' |
675 |
55 |
HaeIII |
NEB2
37C 3% gel |
1
2
1 |
|
|
|
AK155A |
AK155A |
XI |
12 |
TGG_995313 |
1609826 -1610400 |
AK155AF 5'-CAACGTTTCCCTGCAGTC-3' |
AK155AR 5'-CATCCGGTGAGCAGACAC-3' |
575 |
55 |
HpyCH4
V |
NEB1
37C 3% gel |
1
2
2 |
|
|
|
PKG |
|
XI |
13 |
TGG_995313 |
1761933-1762760 |
cGMP-F
5'-
CCTCTCTCGCACTCACTTCC -3' |
cGMP-R
5'-
TCTATAGGCCGGAAAACACG -3' |
828 |
60 |
Hinf
I |
NEB2
37C 2% gel |
1
2
2 |
|
|
|
c1-24 |
|
XI |
14 |
TGG_995313 |
1896275-1896678 |
C1-24F 5’ – ACAGCGACATCCAGATGTTC – 3’ |
C1-24R 5’ – GGAAAGCATGAGTGGTTACA – 3’ |
405 |
55 |
Pci
I |
NEB3
37C 2% gel |
1
2
2 |
|
|
|
UPRT |
|
XI |
15 |
TGG_995313 |
2474398-2474953 |
UPRT-F1 5’-CCCGATATTCGACAAACGAC-3’ |
UPRT-R1 5’-GAGCCGTCTGCTTCATGAGC-3’ |
555 |
55 |
Bst
UI |
NEB2
60C 2% gel |
1
2
2 |
|
|
|
AK137 |
|
XI |
16 |
TGG_995313 |
2747444-2747815 |
AK137F 5'-AGAGGTGTACGTGATTCCTG-3' |
AK137R 5'-GTAGATGCCGACCAGAGC-3' |
372 |
55 |
BseRI |
NEB2
37C 3% gel |
1
2
2 |
|
|
|
AK11 |
|
XI |
17 |
TGG_995313 |
3084624-3085117 |
AK11F 5'-GTGTTTCTCTCGCAGTTTTT-3' |
AK11R 5'-GGCAAACTTAGTTCAACGAC-3' |
494 |
53 |
HinFI |
NEB2
37C 3% gel |
1
2
2 |
|
|
|
AK138 |
|
XI |
18 |
TGG_995313 |
3665884-3666333 |
AK138F 5'-CACCCGCAAGATACACCT-3' |
AK138R 5'-ATAGGCCGGGTAGAAAAAG-3' |
450 |
55 |
Hinf
I |
NEB2
37C 3% gel |
1
2
2 |
|
|
|
L344 |
|
XI |
19 |
TGG_995313 |
3839949-3840436 |
L344-F 5’ – TCGCAACTGAAACCTGAAAA-3’ |
L344-Rx
5’
– CGTTGACTGAGTGGTGCAAA-3’ |
491 |
55 |
Rsa
I |
NEB1
37C 2% gel |
1
2
2 |
|
|
|
AK20 |
6xTGG9807-3 |
XI |
20 |
TGG_995313 |
3958592-3959214 |
TGG9807-3’FTAGAGAGGCCATCCCATTTG-3' |
TGG9807-3’RCCTGCTACACGCCTCCTTAC-3' |
623 |
50 |
ScrFI |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
AK12 |
|
XI |
21 |
TGG_995313 |
4420425-4421136 |
AK12F 5'-CCAACACAATTTTCCAGTTT-3' |
AK12R 5'-GCATAGCATGCTTGTTACAG-3' |
712 |
53 |
BstNI |
NEB2 BSA 60C 3% gel |
1
2
2 |
|
|
|
AK139 |
AK139A |
XI |
22 |
TGG_995313 |
4983182-4983551 |
AK139AF
5'-GAACTTACCTCACTTTCAGC-3' |
AK139AR
5'-GGAAAGAGACACGCGTTA-3' |
370 |
55 |
HpyCH4
III |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
AK140 |
|
XI |
23 |
TGG_995313 |
5346644-5347016 |
AK140F 5'-TCTGTTTTCTGGGACGTG-3' |
AK140R 5'-GCCGCTCTTCTACTCAGC-3' |
373 |
55 |
BstF5I |
NEB4
65C 3% gel |
1
2
2 |
|
|
|
AK149 |
AK149A |
XI |
24 |
TGG_995285 |
915509-916197 |
AK149AF
5'-AGGACAAAGGGAATGACTG-3' |
AK149AR
5'-CAAACGCTTCAGTTGTGTAG-3' |
689 |
55 |
BsmAI |
NEB3
55C 3% gel |
1
2
2 |
|
|
|
AK80 |
TGG995285-B |
XI |
25 |
TGG_995285 |
711520-711769 |
TGG_995285-BF
5'-CTATGCCTACTTCCTTATTGCT-3' |
TGG_995285-BR
5'-CATTTTCCTCCAGACTGA-3' |
250 |
53 |
Hae
III |
NEB2
37C 3% gel |
1
2
2 |
|
|
|
AK81 |
TGG_995285-A |
XI |
26 |
TGG_995285 |
674698-675059 |
TGG_995285-AF 5'-ATCAAATACGGCTGGTACAC-3' |
TGG_995285-AR
5'- ATTCCTCGAACAACACTGTC-3' |
362 |
53 |
HphI |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
AK37 |
6xTGG9388-5 |
XII |
1 |
TGG_994756 |
327627-328374 |
TGG9388-5F
5’-CATCTCATGCTCGTTTCTTC -3’ |
TGG9388-5R
5’-TGGAACAGTATTTCGGTGTC-3’ |
748 |
55 |
Sau3AI |
NEBU BSA 37C 3% gel |
1
1
2 |
AfI
III |
NEB3 BSA 37C 3% gel |
1
2
1 |
AK145 |
|
XII |
2 |
TGG_994756 |
117582-117937 |
AK145F 5'-TAGTGCTGCATTCTTCTCTT-3' |
AK145R 5'-GTGCTTTGACGTTGACATT-3' |
356 |
55 |
AfI
III |
NEB3 BSA 37C 3% gel |
1
1
2 |
|
|
|
SAG3 |
|
XII |
3 |
TGG_995306 |
140010-140320 |
P43S1 5’-CAACTCTCACCATTCCACCC-3’ |
P43AS1 5’-GCGCGTTGTTAGACAAGACA-3’ |
311 |
55 |
Nci
I |
NEB4
37C 3% gel |
1
2
3 |
|
|
|
AK78 |
|
XII |
4 |
TGG_995287 |
1116198-1116787 |
AK78-F'
CGTTTAGCGATATGAAGTGG-3' |
AK78-R
5'-CCAGTCTATACTTGTGACGGTA-3' |
590 |
55 |
NlaIII |
NEB2 BSA 37C 2% gel |
1
2
1 |
|
|
|
AK156 |
|
XII |
5 |
TGG_995287 |
731351-731778 |
AK156F 5'-ATCCAGGTTACCCGAACA-3' |
AK156R 5'-GTACGCGACTGCCTGCTAC-3' |
428 |
55 |
Hpy188III |
NEB4 BSA 37C 3% gel |
1
2
1 |
|
|
|
M6 |
|
XII |
6 |
TGG_995287 |
529076-529256 |
6-1F
5’-CAGAGATTCAACGAGCAACG-3’ |
6-3R
5’-ACGCGATCAGTGGGTTTATG-3’ |
~200 |
55 |
MicroS |
3% gel |
1
2
1 |
|
|
|
M144 |
|
XII |
7 |
|
|
144-1F
5’-TTACCGTTCCAATCGTTTCC-3’ |
144-7R
5’-ATGCGAATACATGTTGATGC-3’ |
~180 |
55 |
MicroS |
4% gel |
1
2
3 |
|
|
|
MIC6 |
|
XII |
8 |
TGG_995287 |
262905-263413 |
MIC6-F2 5'- TCCTGGGAATGGAGAGATTG -3' |
MIC6-R 5' TCCTATAATGGGGAGGCACA -3' |
509 |
55 |
Pst
I |
NEB3 BSA 37C 2% gel |
1
2
1 |
|
|
|
CRK2 |
|
XII |
9 |
TGG_995287 |
71764-72349 |
Crk2-F2
5'-
CAAAGTTCTCGGCACTCCTC -3' |
Crk2-R2
5'-
TTTGGCACCTGACACCAATA -3' |
586 |
55 |
Aci
I |
NEB3
37C 2% gel |
1
2
2 |
|
|
|
AK91 |
TGG_995286-A |
XII |
10 |
TGG_995286 |
167346-167688 |
TGG_995286-AF
5'-AGACTTCCTTCCCAGCAT-3' |
TGG_995286-AR
5'-GTTCCGTTAGCTGTCCTGT-3' |
343 |
53 |
BfaI |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
AK90 |
TGG_995286-B |
XII |
11 |
TGG-995286 |
238414-238891 |
TGG_995286-BF 5'-GATAGCGACGAGGCATAAC-3' |
TGG_995286-BR 5'-GACACTTGGGAGGTAGCAT-3' |
478 |
53 |
AccI |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
AK115 |
|
XII |
12 |
TGG_995286 |
464177-464876 |
AK115F 5'-CACACGCTTTTGACAAAGT-3' |
AK115R 5'-GGCAGACTTCTCCATACTGT-3' |
700 |
55 |
BstU
I |
NEB2
60C 3% gel |
1
2
2 |
|
|
|
AK74 |
|
XII |
13 |
TGG_995291 |
5347-5813 |
AK74F 5'-ATAGAGCTCGAACACCGAGT-3' |
AK74R 5'-ATGCACAGTCACGACGTA-3' |
467 |
55 |
BfaI |
NEB4
37C 3% gel |
1
2
2 |
|
|
|
L31-T7 |
|
XII |
14 |
TGG_995291 |
677746-677973 |
L31-F2x 5'-CTCTCCCCGTTCCGAGAC-3' |
L31-R2x 5'-CGGGAAAAGCGAAGTGGT-3' |
228 |
55 |
MicroS |
3% gel |
1
2
2 |
|
|
|
AK75 |
|
XII |
15 |
TGG_995291 |
1155951-1156181 |
AK75-F'GACAGGAGCGCCTCAAAC-3' |
AK75-R'CGTTGACTTCCCATCTAAAG-3' |
240 |
53 |
BsaHI |
NEB4 BSA 37C 3% gel |
1
2
2 |
|
|
|
AK116 |
AK116A |
XII |
16 |
TGG_995291 |
1572029-1572398 |
AK116AF
5'-ACGCTGACCTGAAGTACTGA-3' |
AK116AR
5'-TCACGGATACTTTCTTCTCC-3' |
370 |
50 |
HhaI |
NEB4 BSA 37C 3% gel |
1
2
2 |
|
|
|
KT-c18B |
c18B |
XII |
17 |
TGG_995291 |
1920036-1920496 |
KT-C18
F2 5’-AGGATCTCGAGCCGCCG- 3’ |
C18
R 5’-AGTGTGTGCGACGTGGCTTCAGTCT-3’ |
460 |
62 |
Bbs
I |
NEB2 BSA 37C 2% gel |
1
2
2 |
|
|
|
L353.c |
|
XII |
18 |
TGG_995291 |
2095204-2095714 |
L353-F2
5’-TTTCCGACAAGGTGGAGAGC-3’ |
L353-R2
5’-AGAGCAGGAGGGATGCAGTG-3’ |
511 |
55 |
Sau96I |
NEB4
37C 2% gel |
1
2
2 |
Nla
III |
NEB4 BSA 37C 2% gel |
1
2
2 |
DHRTS |
|
XII |
19 |
TGG_995291 |
2107525-2107965 |
DHRTS-F
5’-CTGCCTCGACTCGGCCTATAGTCAG-3’ |
DHRTS-R
5’-ATAGAAACGCGGCACCATGC-3’ |
435 |
55 |
BsmAI |
NEB3
55 C 2% gel |
1
2
2 |
|
|
|
AK165 |
|
XII |
20 |
TGG_995291 |
2274142-2274496 |
AK165F 5'-AAATGGGAAATAAGGGAAAC-3' |
AK165R 5'-GCAGACTTTGCTACAGGACT-3' |
355 |
55 |
Apo
I |
NEB3 BSA 37C 2% gel |
1
1
2 |
|
|
|
TgCP1 |
|
XII |
21 |
TGG_995291 |
2471168-2471569 |
TgCP1-F2
5'- GGTCGTTGAAGGCTTCTGTG -3' |
TgCP1-R2
5'- GAAAGAGACTGGCGAAGACG -3' |
402 |
55 |
Rsa
I |
NEB1
37C 2% gel |
1
2
2 |
|
|
|
AK |
|
XII |
22 |
TGG_995291 |
3036716-3037167 |
AK-F1 5’-TCTTGACCAGTTCAATCCGACTTCC-3’ |
AK-R1 5’-CAATGGCTCCCATGTACCCA-3’ |
449 |
55 |
Nla
III |
NEB4 BSA 37C 2% gel |
1
2
2 |
|
|
|
B10 |
|
XII |
23 |
TGG_995291 |
3201947-3202397 |
B10-F
5’-TTGGAAGAAAGTCAGCGCAC-3’ |
DHRTS-R
5’-ATAGAAACGCGGCACCATGC-3’ |
451 |
55 |
HpyCH4
IV |
NEB1
37C 2% gel |
1
2
2 |
|
|
|
KT-c20F |
c20 |
XII |
24 |
TGG_995291 |
3333281-3334000 |
KT-C20F
F 5’- CAGCTGACTACTAGAATCGCACGCG - 3’ |
KT-C20F
R 5’-CCACTGTCCCGTCCGTGTCTTCTT-3’ |
720 |
62 |
Bcc
I |
NEB1 BSA 37C 2% gel |
1
2
2 |
|
|
|
AK77 |
RC27 |
XII |
25 |
TGG_995299 |
1023070-1023322 |
AK77F-5'CTCTACGTCGCACAGAGC -3' |
AK77R-5' GCGAACAGTCACTAGGAAAC-3' |
253 |
55 |
NlaIII |
NEB4 BSA 65C 2% gel |
1
2
2 |
|
|
|
M163 |
|
XII |
26 |
TGG_995299 |
710726-710851 |
163-1F
5’-GCTTTTGACGTCCACTTCG-3’ |
163-2R
5’CCTCCTTCTCAAAGGTCAAGC-3’ |
~
180 |
55 |
MicroS |
3% gel |
1
2
3 |
|
|
|
BM17053 |
|
XII |
27 |
TGG_995299 |
419375-419631 |
BM17053-F
5'- CGACAAGTCCATGCGAACTA -3' |
BM17053-R
5'- GGCAACAGGAGGTAGAGGAG -3' |
248-254 I/II,III |
55 |
Hinf
I |
NEB2
37C 2% gel |
1
2
2 |
|
|
|
MIC5 |
|
XII |
28 |
TGG_995299 |
181308-182021 |
MIC5-F 5'- GCGGTGGTCAGATTCCTCTA -3' |
MIC5-R 5'- GCCCAGTGTCGATAGCAAAT -3' |
714 |
55 |
Hha
I |
NEB4 BSA 37C 2% gel |
1
2
2 |
|
|
|
ST5A |
|
XII |
29 |
TGG_994811 |
46445-47100 |
ST5A-F 5'-AACAGCGACGACCATAGAT -3' |
ST5A-R 5'-GTAGGGATGGTGCTGTCTC-3' |
655 |
55 |
HaeIII |
NEB2
37C 2% gel |
1
2
2 |
|
|
|
ST5B |
|
XII |
30 |
TGG_994811 |
46050-46700 |
ST5B-F
5'-AACCGATCCATCCCTCTT -3' |
ST5B-R 5'-CCACCAATTCGATGTGCTT -3' |
650 |
55 |
BsmAI |
NEB3
55C 2% gel |
1
2
2 |
|
|
|
ST6A |
|
XII |
31 |
TGG_995341 |
40903-41753 |
ST6A-F
5'-CCCTCTTCGACTTCTGTAAC -3' |
ST6A-R 5'-TTCTATGCGAACGTGTGAT -3' |
850 |
55 |
HpaII |
NEB1
37C 2% gel |
1
2
2 |
|
|
|